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IPQ Analytics

IPQ AnalyticsIPQ AnalyticsIPQ Analytics
Home
Approach
Research
Technology
Solutions
About
Contact
More
  • Home
  • Approach
  • Research
  • Technology
  • Solutions
  • About
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The patient of the future is already present

APPROACH

IPQ engages with its clients to establish a collaborative approach to its model-building


  • Listen and understand the client’s questions and how the answers are intended to be used
  • Perform root-cause analysis to probe the client’s questions and go beyond surface level issues
  • Review and prioritize the questions to address


IPQ typically accomplishes this using a two-phase model, adapted to specific client requirements. 


Phase I: In collaboration with “the client”, IPQ will work to help identify and quantify both the critical “unmet clinical (or commercial) needs” and go beyond that to identify and quantify the even more critical “unstated, unmet needs”. We term this “root cause analysis” and work with the client to define, refine and prioritize requirements to address these gaps.  IPQ then deconvolutes these “needs” to identify critical concepts and relationships necessary to address them and adds these to its proprietary model of the patient journey, as needed. This is instantiated within IPQ’s novel knowledge graph and identification of critical data sources, public and private, are undertaken. 

Client data can be incorporated into this process. Use of IPQ’s knowledge graph identifies additional key concepts and relationships which are reviewed with the client to establish the “disease model” that incorporates the complexity of the real-world patient population, the need for refinement and stratification of existing disease/diagnosis categories and critical factors, e.g. conflicting guidelines, standards of care, reimbursement, that may exist.  Phase I is typically done as a pilot study.


  • Example: initial question: in multiple sclerosis, the neurologist’s question focuses on identifying the best treatment option, i.e. drug, for their patient. Problem to be addressed: The potentially more critical question concerns the adequacy of the diagnosis, i.e. 85% of all patients have relapsing remitting disease as a diagnosis (RRMS), which results from “ruling out other conditions”. This diagnosis requires further stratification into disease subtypes that should also consider the 5 year patient journey (on average) to diagnosis, personalized clinical presentation and intervening treatments for symptoms to provide stratification of RRMS and better analysis of potential treatments.


Phase II: IPQ will establish a unique federated data model whereby data sources, identified in Phase I, will be linked while maintaining individual data provenance. This enables further linking to national level public data sources in compliance with HIPAA and GDPR requirements. Critical evaluation of specific data fields within each data base, in support of the disease model, will be carried out to establish context and quality/confidence in existing data. This is critical to support quality analysis including AI/ML approaches as data fields with identical labels commonly do not contain data collected or computed in the same manner across multiple data sources. This can be a significant source of uncertainty affecting the analysis results and their potential interpretation because of limited content of contextual data maintained in EHR’s. These qualification factors are maintained in a parallel database so that later analyses can refer to these assessments prior to selection of data cohorts, etc. Missing data, potential biases in data and conflicting data are identified and incorporated into addressing the client’s original and expanded questions. In this manner, both the answers and their specific confidence levels or constraints can be established and reviewed with the client for further action, e.g. further data acquisition, etc.

RECENT PUBLICATIONS

JULY 2023

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March 2023

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Archived Publications (upon request)

Community Detection in Medicine: Preserved Ejection Fraction Heart Failure (HFpEF)

Michael Liebman, * Stefania Pieroni, Michela Franchini, Loredana Fortunato, Marco Scalese, Sabrina

Molinaro, Mark Wainger, and Steven P. Reinhardt, Exploratory Research and Hypothesis in

Medicine (1-24) 2022

Application of an Automated Natural Language Processing (NLP) Workflow to Enable Federated Search

Application of an Automated Natural Language Processing (NLP) Workflow to Enable Federated Search of External Biomedical Content in Drug Discovery and Development, Robin McEntire, Debbie Szalkowski, James Butler, Michelle S. Kuo, Meiping Chang, Man Chang, Darren Freeman, Sarah McQuay, Jagruti Patel, Michael McGlashen, Wendy D. Cornell, Drug Discovery Today, May, 2016

From Personalized Medicine to Personalized Aging Services

Allen Glicksman, Misha Rodriguez, Lauren Ring, and Michael Liebman, Innovation in Aging, in press, Shifting the Paradigm, 2021

The Dress-COV Telegram Bot as a Tool for Participatory Medicine

Mi Franchini, S Pieroni, N Martini, A Ripoli, D Chiappino, F Denoth, M N Liebman, S Molinaro 1 and D Della Latta, International Journal of Environmental Research and Public Health, 17, 8786 (1-19) 2020

The Prediction of Drug-Disease Correlation based on Gene Expression Data

Cui, H., Zhang, M., Yang, Q., Li, X., Liebman, M.N., Yu, Y., and Xie L. Biomed Research International 2018

Translational Chemical Biology

Chorghade, M., Liebman, M., Lushington, G., Naylor, S. and Chaguturu, R.,Drug Discovery World, Winter 2016/2017, p72-90

Integrated Information for integrated Care in the General Practice Setting

Integrated Information for integrated Care in the General Practice Setting: Using Social Network Analysis to go

beyond the Diagnosis of Frailty in the Elderly,Franchini, M. Pieroni, S., Fortunato, L, Knezevic, T, Liebman, M.N., Molinaro, S, Clinical Translational Medicine (2016) 5:24

Poly-pharmacy among the Elderly: Analyzing the Co-morbidity of Hypertension and Diabetes

Franchini, M, Pieroni, S, Fortunato, L, Molinaro, S and Liebman, M.N, Current Pharmaceutical Design

(2015) 21(6): 791 – 805

The application of observational data in translational medicine

The application of observational data in translational medicine: analyzing tobacco-use behaviors of

adolescents Journal of Translational Medicine 2012, 10:89 doi:10.1186/1479-5876-10-89

Bridging the gap between translational medicine and unmet clinical needs

Liebman, M., Franchini, M and Molinaro, S, Technology and Health Care 23 (2015) 109–118

Drug resistance in ALK-positive Non-small cell lung cancer patients

Qian, M.. Zhu, B., Wang, X., Liebman, M. N., Seminars in Cell and Developmental Biology, (2016) in press

DW4TR: A Data Warehouse for Translational Research

Hu, H., Correll, M; Kvecher, L.; Osmond, M.; Clark, J.; Bekash, A.; Schwab, G.; Gao, D.; JGao, J.;

Kubatin;, V., Shriver, C.D.; Hooke;, J.A. Maxwell;, L.G. Kovatich, A.J., Sheldon, J.G.; Liebman,

M.N. and Mural, J Biomed Inform. 2011 Dec;44(6):1004-19. Epub 2011 Aug 22.

Volume Applications of an adaptive knowledge platform in translational medicine for breast cancer

Huttin, Christine and Michael Liebman, Technology and Healthcare, Vol 19, Number 5 (2011), pp. 349-354

Assessing semantic similarity measures for the characterization of human regulatory pathways

Guo X, Liu R, Shriver CD, Hu H, Liebman MN. Bioinformatics. 2006 Apr 15;22(8):967-73. Epub

2006 Feb 21

Expanding the perspective of translational medicine: the value of observational data

Michael N Liebman and Francesco M Marincola. Journal of Translational Medicine 2012,

10:61 doi:10.1186/1479-5876-10-61

The Economics of Biobanking and Pharmacogenetics Databasing

Huttin, C.C. and Liebman, M. N. (2013) 21, 183-190

Ultimate Question

Liebman, M. N., Translational Scientist, (2016) 2701-2705

Approaches in rare diseases and pediatrics across international boundaries

Michael Liebman, Journal of Translational Medicine 2012, 10(Suppl 2):A43 doi:10.1186/1479-5876-10-S2-A43

Technologic Innovations that will Improve Quality of Care and Quality of Life for the Cancer Patient

Lester, D and Liebman,M. N., Coping with Cancer, Lea K Jacobs, ed, Nova Science, New York, NY 2008

Hypothesis Generation and Evaluation in Clinical Trial Design

Liebman, M. N. and Molinaro, S, IEEE Transactions on Bioinformatics and Biomedicine (BIBM) Nov. 2011 p645 – 651

Bridging the Gap Between Preclinical and Clinical Informatics via Processes

Bridging the Gap Between Preclinical and Clinical Informatics via Processes, Communication and Improved Utilization of Data, at CBI’s Hepatotoxicity Summit, Nov 6-7, 2009, Philadelphia, PA

Semantic Web in the Pharmaceutical Industry

Invited presentation at Knowledge-Based Bioinformatics Workshop, Montreal, Canada, Sept 21-23, 2005

Book Chapter: “Ontologies”

In Silico Technology in Drug Target Identification and Validation, Eds. Dr. Darryl Leon and Dr. Scott Markel

myGrid and the Drug Discovery Process

Robert Stevens, Robin McEntire, Carole Goble, Mark Greenwood, Jun Zhao, Anil Wipat and Peter Li, BioSilico, May, 2004

An Evaluation of Ontology Exchange Languages for Bioinformatics

R. McEntire, Peter Karp, Neil Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric Neumann, Frank Olken, Dhiraj Pathak, Peter Tarczy-Hornoch, Luca Toldo and Thodoros Topaloglou, An Evaluation of Ontology Exchange Languages for Bioinformatics, in "Proceedings Eighth International Conference on Intelligent Systems for Molecular Biology", The AAAI Press, Menlo Park, CA, USA, August, 2000

KQML - A Language and Protocol for Knowledge and Information Exchange

Tim Finin, Don McKay, Rich Fritzson, and Robin McEntire,  in "Proceedings of the 13th International Distributed Artificial Intelligence Workshop", AAAI Press, July 1994

KQML: An Information and Knowledge Exchange Protocol

Tim Finin, Don McKay, Rich Fritzson, and Robin McEntire, in Toshio Yokoi (Ed.) Building and Sharing of Very Large-Scale Knowledge Bases, Ohmsha and IOS Press, 1994

Contact

Email angela@ipqanalytics.com for publications and more information

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Approach to COVID-Modeling

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